SWVRC Fianance, Loans & Debt

Main Menu

  • Home
  • Coefficient of Variation
  • Temporal
  • Nasdaq
  • MSCIWI
  • Debt

SWVRC Fianance, Loans & Debt

Header Banner

SWVRC Fianance, Loans & Debt

  • Home
  • Coefficient of Variation
  • Temporal
  • Nasdaq
  • MSCIWI
  • Debt
Coefficient of Variation
Home›Coefficient of Variation›Population genetics reveals divergent lineages and ongoing hybridization in a declining migratory fish species complex

Population genetics reveals divergent lineages and ongoing hybridization in a declining migratory fish species complex

By Maureen Bellinger
June 4, 2022
0
0
  • Abbott R, Albach D, Ansell S, Arntzen JW, Baird SJE, Bierne N et al. (2013) Hybridization and speciation. J Evolut Biol 26:229–246

    CAS 
    Article 

    Google Scholar 

  • Alexandrino P, Faria R, Linhares D, Castro F, Corre ML, Sabatié R et al. (2006) Interspecific differentiation and intraspecific substructure in two closely related clupeids with extensive hybridization, Alosa alosa and Alosa fallax. J Fish Biol 69:242–259

    CAS 
    Article 

    Google Scholar 

  • Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160:1217–1229

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Aprahamian MW, Baglinière J-LJ-L, Sabatié M-R, Alexandrino P, Theil R, Aprhamian CD (2003) Biology, Status and Conservation of the Anadromous Atlantic Twaite Shad Alosa fallax fallax. In: Biodiversity, status and conservation of world’s shads, American Fisheries Society Symposium. American Fisheries Society

  • Baglinière J, Sabatié M, Rochard E, Alexandrino P, Aprahamian M (2003a) The allis shad Alosa alosa: Biology, ecology, range, and status of populations. Am Fish Soc Symp 2003:85–102

    Google Scholar 

  • Baglinière J-L, Sabatié MR, Rochard E, Alexandrino P, Aprahamian MW (2003b) The allis shad Alosa alosa: Biology, ecology, range, and status of populations. Am Fish Soc Symp 2003:85–102

    Google Scholar 

  • Baglinière JL, Launey S, Beaulaton L (2020a) La grande Alose Alosa alosa, Linnaeus, 1758. In “ Les poissons d’eau douce de France. 2nde édition, Biotope Editions, Mèze; Muséum national d’Histoire naturelle, Keith P., Poulet N., Denys G., Changeux T., Feunteun E. et Persat H. J. (Coords.), Muséum national d’histoire naturelle, Paris, Collection inventaire et biodiversité, pp. 294–297

  • Baglinière JL, Launey S, Denys G, Beaulaton L (2020b) L’Alose feinte atlantique Alosa fallax, Lacépède 1803. In “ Les poissons d’eau douce de France. 2nde édition, Biotope Editions, Mèze; Muséum national d’Histoire naturelle, Keith P., Poulet N., Denys G., Changeux T., Feunteun E. et Persat H. J. (Coords.), Muséum national d’histoire naturelle, Paris, Collection inventaire et biodiversité, pp. 298–300

  • Baglinière JL, Launey S, Denys G, Beaulaton L (2020c) Ordre des Clupéiformes. Famille des Clupeidae. In “ Les poissons d’eau douce de France. 2nde édition, Biotope Editions, Mèze; Muséum national d’Histoire naturelle, Keith P., Poulet N., Denys G., Changeux T., Feunteun E. et Persat H. J. (Coords.), Muséum national d’histoire naturelle, Paris, Collection inventaire et biodiversité, pp. 291–292

  • Barth JMI, Gubili C, Matschiner M, Toressen O, Watanabe S, Egger B et al. (2020) Stable species boundaries despite 10 million years of hybridization in tropical eels. Nat Commun 11:1433

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Barton N, Bengtsson BO (1986) The barrier to genetic exchange between hybridising populations. Heredity 57:357–376

    PubMed 
    Article 

    Google Scholar 

  • Barton NH, Hewitt GM (1985) Analysis of Hybrid Zones. Annu Rev Ecol Syst 16:113–148

    Article 

    Google Scholar 

  • Barton K (2020) Mu-MIn: Multi-model inference. R Package Version 0.12.2/r18. http://R-Forge.R-project.org/projects/mumin/

  • Bates D, Maechler M, Bolker B, Walker S (2015) Fitting linear mixed-effects models using lme4. J Stat Softw 67:1–48

    Article 

    Google Scholar 

  • Battey CJ, Ralph PL, Kern AD (2020) Space is the place: effects of continuous spatial structure on analysis of population genetic data. Genetics 215:193–214

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Beacham TD, Wallace C, Jonsen K, McIntosh B, Candy JR, Willis D et al. (2019) Variation in migration pattern, broodstock origin, and family productivity of coho salmon hatchery populations in British Columbia, Canada, derived from parentage-based tagging. Ecol Evolution 9:9891–9906

    Article 

    Google Scholar 

  • Belkhir K, Borsam P, Chikhi L, Raufaste N, Bonhomme F, Belkir K et al. (1996) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II, Montpellier (France)

    Google Scholar 

  • Bernatchez L (2001) The Evolutionary History of Brown Trout (salmo Trutta L.) Inferred from Phylogeographic, Nested Clade, and Mismatch Analyses of Mitochondrial Dna Variation. Evolution 55:351–379

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Berrebi P, Caputo Barucchi V, Splendiani A, Muracciole S, Sabatini A, Palmas F et al. (2019) Brown trout (Salmo trutta L.) high genetic diversity around the Tyrrhenian Sea as revealed by nuclear and mitochondrial markers. Hydrobiologia 826:209–231

    CAS 
    Article 

    Google Scholar 

  • Bianco PG (2005) The Status of the Twaite Shad, Alosa agone, in Italy and the Western Balkans. Mar Ecol 23:51–64

    Article 

    Google Scholar 

  • Bierne N, Welch J, Loire E, Bonhomme F, David P (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Mol Ecol 20:2044–2072

    PubMed 
    Article 

    Google Scholar 

  • Cavalli-Sforza LL, Edwards AW (1967) Phylogenetic analysis. Models and estimation procedures. Am J Hum Genet 19:233–257

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Cayuela H, Boualit L, Arsovski D, Bonnaire E, Pichenot J, Bellec A et al. (2016) Does habitat unpredictability promote the evolution of a colonizer syndrome in amphibian metapopulations? Ecology 97:2658–2670

    PubMed 
    Article 

    Google Scholar 

  • Cayuela H, Rougemont Q, Laporte M, Mérot C, Normandeau E, Dorant Y et al. (2020) Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish. Mol Ecol 29:2379–2398

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Cayuela H, Rougemont Q, Prunier JG, Moore J-S, Clobert J, Besnard A et al. (2018) Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review. Mol Ecol 27:3976–4010

    PubMed 
    Article 

    Google Scholar 

  • Ceballos G, Ehrlich PR, Raven PH (2020) Vertebrates on the brink as indicators of biological annihilation and the sixth mass extinction. PNAS 117:13596–13602

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Chiesa S, Piccinini A, Lucentini L, Filonzi L, Marzano FN (2014) Genetic data on endangered twaite shad (Clupeidae) assessed in landlocked and anadromous populations: one or more species? Rev Fish Biol Fish 24:659–670

    Article 

    Google Scholar 

  • Coscia I, Rountree V, King JJ, Roche WK, Mariani S (2010) A highly permeable species boundary between two anadromous fishes. J Fish Biol 77:1137–1149

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Cruickshank TE, Hahn MW (2014) Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Mol Ecol 23:3133–3157

    PubMed 
    Article 

    Google Scholar 

  • Csilléry K, François O, Blum MGB (2012) ABC: an R package for Approximate Bayesian computation (ABC). Methods Ecol Evolution 3:475–479

    Article 

    Google Scholar 

  • Dieringer D, Schlötterer C (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3:167–169

    CAS 
    Article 

    Google Scholar 

  • Duranton M, Allal F, Fraïsse C, Bierne N, Bonhomme F, Gagnaire P-A (2018) The origin and remolding of genomic islands of differentiation in the European sea bass. Nat Commun 9:2518

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • Earl DA, vonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359–361

    Article 

    Google Scholar 

  • Estoup A, Largiader C, Perrot E, Chourrout D (1996) Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol Mar Biol Biotechnol 5:295–298

    CAS 

    Google Scholar 

  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, Bonatto SL et al. (2007) Statistical evaluation of alternative models of human evolution. Proc Natl Acad Sci 104:17614–17619

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567–1587

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Faria R, Wallner B, Weiss S, Alexandrino P (2004) Isolation and characterization of eight dinucleotide microsatellite loci from two closely related clupeid species (Alosa alosa and A. fallax). Mol Ecol Notes 4:586–588

    CAS 
    Article 

    Google Scholar 

  • Faria R, Weiss S, Alexandrino P (2006) A molecular phylogenetic perspective on the evolutionary history of Alosa spp. (Clupeidae). Mol Phylogenet Evol 40:298–304

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Faria R, Weiss S, Alexandrino P (2012) Comparative phylogeography and demographic history of European shads (Alosa alosa and A. fallax) inferred from mitochondrial DNA. BMC Evolut Biol 12:194

    Article 

    Google Scholar 

  • Felsenstein J (1995) PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences. University of Washington, Seattle. WA

    Google Scholar 

  • Francis RM (2017) pophelper: an R package and web app to analyse and visualize population structure. Mol Ecol Resour 17:27–32

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Frankham R (1997) Do island populations have less genetic variation than mainland populations? Heredity 78:311–327

    PubMed 
    Article 

    Google Scholar 

  • Frankham R (2005) Genetics and extinction. Biol Conserv 126:131–140

    Article 

    Google Scholar 

  • Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10:305–318

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • García-Dorado A, Caballero A (2021) Neutral genetic diversity as a useful tool for conservation biology. Conserv Genet 22:541–545

  • Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92:6723–6727

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Goudet J (1995) FSTAT (Version 1.2): A Computer Program to Calculate F-Statistics. J Hered 86:485–486

    Article 

    Google Scholar 

  • Harris RB, Sackman A, Jensen JD (2018) On the unfounded enthusiasm for soft selective sweeps II: Examining recent evidence from humans, flies, and viruses. PLOS Genet 14:e1007859

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • Hasselman DJ, Ricard D, Bentzen P (2013) Genetic diversity and differentiation in a wide ranging anadromous fish, American shad (Alosa sapidissima), is correlated with latitude. Mol Ecol 22:1558–1573

    PubMed 
    Article 

    Google Scholar 

  • Hedrick PW (2013) Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation. Mol Ecol 22:4606–4618

    PubMed 
    Article 

    Google Scholar 

  • Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247–276

    Article 

    Google Scholar 

  • Hothorn T, Bretz F, Westfall P (2008) Simultaneous inference in general parametric models. Biometrical J 50:346–363

    Article 

    Google Scholar 

  • Hudson RR (2002) Generating samples under a Wright–Fisher neutral model of genetic variation. Bioinformatics 18:337–338. https://doi.org/10.1093/bioinformatics/18.2.337

  • Illera JC, Palmero AM, Laiolo P, Rodríguez F, Moreno ÁC, Navascués M(2014) genetic, morphological, and acoustic evidence reveals lack of diversification in the colonization process in an Island Bird Evolution 68:2259–2274

    PubMed 

    Google Scholar 

  • Jolly MT, Aprahamian MW, Hawkins SJ, Henderson PA, Hillman R, O’Maoiléidigh N et al. (2012) Population genetic structure of protected allis shad (Alosa alosa) and twaite shad (Alosa fallax). Mar Biol 159:675–687

    Article 

    Google Scholar 

  • Jolly MT, Maitland PS, Genner MJ (2011) Genetic monitoring of two decades of hybridization between allis shad (Alosa alosa) and twaite shad (Alosa fallax). Conserv Genet 12:1087–1100

    Article 

    Google Scholar 

  • Jombart T (2008) adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403–1405

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Keefer ML, Caudill CC (2014) Homing and straying by anadromous salmonids: a review of mechanisms and rates. Rev Fish Biol Fish 24:333–368

    Article 

    Google Scholar 

  • Kim BY, Huber CD, Lohmueller KE (2018) Deleterious variation shapes the genomic landscape of introgression. PLOS Genet 14:e1007741

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • Le Corre ML, Alexandrino P, Sabatie MR, Aprahamian MW, Baglinière JL (2005) Genetic characterisation of the Rhodanian twaite shad, Alosa fallax rhodanensis. Fish Manag Ecol 12:275–282

    Article 

    Google Scholar 

  • Leroy T, Rougemont Q, Dupouey J-L, Bodénès C, Lalanne C, Belser C et al. (2019) Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers. N Phytologist 226:1183–1197

    Article 

    Google Scholar 

  • Leroy T, Rousselle M, Tilak M-K, Caizergues AE, Scornavacca C, Recuerda M et al. (2021) Island songbirds as windows into evolution in small populations. Curr Biol 31:303–1310

    Article 
    CAS 

    Google Scholar 

  • Limburg KE, Waldman JR (2009) Dramatic declines in North Atlantic diadromous fishes. BioScience 59:955–965

    Article 

    Google Scholar 

  • Maitland PS, Lyle AA (2005) Ecology of allis shad Alosa alosa and twaite shad Alosa fallax in the Solway Firth, Scotland. Hydrobiologia 534:205–221

    Article 

    Google Scholar 

  • Malinsky M, Challis RJ, Tyers AM, Schiffels S, Terai Y, Ngatunga BP et al. (2015) Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science 350:1493–1498

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Martin SH, Dasmahapatra KK, Nadeau NJ, Salazar C, Walters JR, Simpson F et al. (2013) Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Res 23:1817–1828

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Martin J, Bareille G, Berail S, Pecheyran C, Daverat F, Bru N et al. (2013) Spatial and temporal variations in otolith chemistry and relationships with water chemistry: a useful tool to distinguish Atlantic salmon Salmo salar parr from different natal streams. J Fish Biol 82:1556–1581

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Martin J, Rougemont Q, Drouineau H, Launey S, Jatteau P, Bareille G et al. (2015) Dispersal capacities of anadromous Allis shad population inferred from a coupled genetic and otolith approach. Can J Fish Aquat Sci 72:991–1003

    Article 

    Google Scholar 

  • Mason NA, Fletcher NK, Gill BA, Funk WC, Zamudio KR (2020) Coalescent-based species delimitation is sensitive to geographic sampling and isolation by distance. Syst Biodivers 3:269–280

    Article 

    Google Scholar 

  • Meirmans PG (2012) The trouble with isolation by distance. Mol Ecol 21(12):2839–2846

    PubMed 
    Article 

    Google Scholar 

  • Mennesson-Boisneau C, Aprahamian MW, Sabatié MR, Cassous-Leins JJ (2000a) Caractéristiques des adultes. In Les aloses Alosa alosa et Alosa fallax spp. (Bagliniè re. JL & Elie P eds). pp. 33–53. Paris: INRA-Cemagref

  • Mikkelsen EK, Irwin (2021) Ongoing production of low-fitness hybrids limits range overlap between divergent cryptic species. Mol Ecol 30:4090–4102

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Nachón DJ, Bareille G, Drouineau H, Tabouret H, Taverny C, Boisneau C et al. (2020) 1980s population-specific compositions of two related anadromous shad species during the oceanic phase determined by microchemistry of archived otoliths. Can J Fish Aquat Sci 77:164–176

    Article 

    Google Scholar 

  • Nei, M (1987) Molecular Evolutionary Genetics, 9780231063210, Columbia University Press

  • Nei M (1973) Analysis of Gene Diversity in Subdivided Populations. Proc Natl Acad Sci USA 70:3321–3323. https://doi.org/10.1073/pnas.70.12.3321

    CAS 
    Article 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Nielsen EE, Bach LA, Kotlicki P (2006) hybridlab (version 1.0): a program for generating simulated hybrids from population samples. Mol Ecol Notes 6:971–973

    Article 

    Google Scholar 

  • Oosterhout CV, Hutchinson WF, Wills DPM, Shipley P (2004) micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article 
    CAS 

    Google Scholar 

  • Paetkau D, Slade R, Burden M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol Ecol 13:55–65

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Page RDM (1996) Tree View: An application to display phylogenetic trees on personal computers. Bioinformatics 12:357–358

    CAS 
    Article 

    Google Scholar 

  • Parrish DL, Behnke RJ, Gephard SR, McCormick SD, Reeves GH (1998) Why aren’t there more Atlantic salmon (Salmo salar)? 55: 7

  • Perrier C, Guyomard R, Bagliniere J-L, Evanno G (2011) Determinants of hierarchical genetic structure in Atlantic salmon populations: environmental factors vs. anthropogenic influences. Mol Ecol 20:4231–4245

    PubMed 
    Article 

    Google Scholar 

  • Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A (2004) GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection. J Heredity 95:536–539

    CAS 
    Article 

    Google Scholar 

  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of Population Structure Using Multilocus Genotype Data. Genetics 155:945–959

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • R Development Core Team (2015) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria

  • Randon, M, Daverat, F, Bareille, G, Jatteau, PH, Martin, J, Pecheyran, C, Drouineau, H (2017) Quantifying exchanges of Allis shads between river catchments by combining otolith microchemistry and abundance indices in a Bayesian model. ICES Journal of Marine Science

  • Ravinet M, Faria R, Butlin RK, Galindo J, Bierne N, Rafajlović M et al. (2017) Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow. J Evolut Biol 30:1450–1477

    CAS 
    Article 

    Google Scholar 

  • Riquet F, Liautard-Haag C, Woodall L, Bouza C, Louisy P, Hamer B et al. (2019) Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages. Evolution 73:817–835

    PubMed 
    Article 

    Google Scholar 

  • Robinet T, Roussel V, Cheze K, Gagnaire P-A (2020) Spatial gradients of introgressed ancestry reveal cryptic connectivity patterns in a high gene flow marine fish. Mol Ecol 29:3857–3871

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Rougemont Q, Bernatchez L (2018) The demographic history of Atlantic salmon (Salmo salar) across its distribution range reconstructed from approximate Bayesian computations*. Evolution 72:1261–1277

    PubMed 
    Article 

    Google Scholar 

  • Rougemont Q, Besnard A-L, Baglinière J-L, Launey S (2015) Characterization of thirteen new microsatellite markers for allis shad (Alosa alosa) and twaite shad (Alosa fallax). Conserv Genet Resour 7:259–261

    Article 

    Google Scholar 

  • Rougemont Q, Gagnaire P-A, Perrier C, Genthon C, Besnard A-L, Launey S et al. (2017) Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and nonparasitic lamprey ecotypes. Mol Ecol 26:142–162

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Rougemont Q, Moore J-S, Leroy T, Normandeau E, Rondeau EB, Withler RE et al. (2020) Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon. PLOS Genet 16:e1008348

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Rougemont Q, Roux C, Neuenschwander S, Goudet J, Launey S, Evanno G (2016) Reconstructing the demographic history of divergence between European river and brook lampreys using approximate Bayesian computations. PeerJ 4:e1910

    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Rougier T, Lambert P, Drouineau H, Girardin M, Castelnaud G, Carry L et al. (2012) Collapse of allis shad, Alosa alosa, in the Gironde system (southwest France): environmental change, fishing mortality, or Allee effect? ICES J Mar Sci 69:1802–1811

    Article 

    Google Scholar 

  • Rousset F (2008) genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8:103–106

    PubMed 
    Article 

    Google Scholar 

  • Roux C, Fraïsse C, Romiguier J, Anciaux Y, Galtier N, Bierne N (2016) Shedding light on the grey zone of speciation along a continuum of genomic divergence. PLoS Biol 14:e2000234

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • Roux C, Fraïsse C, Castric V, Vekemans X, Pogson GH, Bierne N (2014) Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone. J Evolut Biol 27:1662–1675

    CAS 
    Article 

    Google Scholar 

  • Roux C, Tsagkogeorga G, Bierne N, Galtier N (2013) Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species. Mol Biol Evolut 30:1574–1587

    CAS 
    Article 

    Google Scholar 

  • Ryan SF, Deines JM, Scriber JM, Pfrender ME, Jones SE, Emrich SJ et al. (2018) Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling. PNAS 115:E2284–E2291

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS 
    PubMed 

    Google Scholar 

  • Shimoda N, Knapik EW, Ziniti J, Sim C, Yamada E, Kaplan S et al. (1999) Zebrafish genetic map with 2000 microsatellite markers. Genomics 58:219–232

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Stevens VM, Whitmee S, Galliard J-FL, Clobert J, Böhning-Gaese K, Bonte D et al. (2014) A comparative analysis of dispersal syndromes in terrestrial and semi-terrestrial animals. Ecol Lett 17:1039–1052

    PubMed 
    Article 

    Google Scholar 

  • Taillebois L, Sabatino S, Manicki A, Daverat F, Nachón DJ, Lepais O (2020) Variable outcomes of hybridization between declining Alosa alosa and Alosa fallax. Evolut Appl 13:636–651

    Article 

    Google Scholar 

  • Tavernie P, Elie E (2001) Répartition spatio-temporelle de la grande alose (Alosa alosa, Linné, 1766) et de l’alose feinte (Alosa fallax, Lacépéde, 1803) dans le golfe de gascogne. 803-821. Knowl Manag Aquat -Ecosyst 362:803–820

    Article 

    Google Scholar 

  • Teixeira JC, Huber CD (2021) The inflated significance of neutral genetic diversity in conservation genetics. PNAS 118:e2015096118

    CAS 
    PubMed 
    PubMed Central 
    Article 

    Google Scholar 

  • Tine M, Kuhl H, Gagnaire P-A, Louro B, Desmarais E, Martins RST et al. (2014) European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation. Nat Commun 5:5770

    CAS 
    PubMed 
    Article 

    Google Scholar 

  • Tomás J, Augagneur S, Rochard E (2005) Discrimination of the natal origin of young-of-the-year Allis shad (Alosa alosa) in the Garonne–Dordogne basin (south-west France) using otolith chemistry. Ecol Freshw Fish 14:185–190

    Article 

    Google Scholar 

  • Tricou T, Tannier E, de Vienne D (2022) Ghost Lineages Highly Influence the Interpretation of Introgression Tests, Systematic Biology, syac011

  • Tusso S, Nieuwenhuis BPS, Weissensteiner B, Immler S, Wolf JBW (2021) Experimental evolution of adaptive divergence under varying degrees of gene flow. Nat Ecol Evol 5:338–349

    PubMed 
    Article 

    Google Scholar 

  • Vähä J-P, Primmer CR (2006) Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. Mol Ecol 15:63–72

    PubMed 
    Article 
    CAS 

    Google Scholar 

  • Walther BD, Thorrold SR (2008) Continental-scale variation in otolith geochemistry of juvenile American shad (Alosa sapidissima). Can J Fish Aquat Sci 65:2623–2635

    CAS 
    Article 

    Google Scholar 

  • Waters JM, Epifanio JM, Gunter T, Brown BL (2000) Homing behaviour facilitates subtle genetic differentiation among river populations of Alosa sapidissima: microsatellites and mtDNA. J Fish Biol 56:622–636

    Article 

    Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370

    CAS 
    PubMed 

    Google Scholar 

  • Wilcove DS, Wikelski M (2008) Going, going, gone: is animal migration disappearing. PLOS Biol 6:e188

    PubMed 
    PubMed Central 
    Article 
    CAS 

    Google Scholar 

  • Wu C-I (2001) The genic view of the process of speciation. J Evolut Biol 14:851–865

    Article 

    Google Scholar 

  • Yue GH, David L, Orban L (2006) Mutation rate and pattern of microsatellites in common carp (Cyprinus carpio L.). Genetica 129:329–331

    PubMed 
    Article 
    CAS 

    Google Scholar 

  • Related posts:

    1. Predicting tissue-specific gene expression from complete blood transcriptome
    2. MRI biomarker to foretell LNM in T3 stage rectal carcinoma
    3. Medical Components Related to Excessive Glycemic Variability Outlined by
    4. Significance of RDW in predicting mortality in COVID‐19—An evaluation of 622 circumstances – Soni – – Worldwide Journal of Laboratory Hematology

    Categories

    • Coefficient of Variation
    • Debt
    • MSCIWI
    • Nasdaq
    • Temporal
    • Terms and Conditions
    • Privacy Policy